Index

A

AccumulatorMap (in module flowrep.parsers.for_parser) all_accumulators (flowrep.parsers.symbol_scope.SymbolScope property) assigned (flowrep.parsers.case_helpers.WalkedBranch attribute) assigned_symbols (flowrep.parsers.symbol_scope.SymbolScope property)

ATOMIC (flowrep.base_models.RecipeElementType attribute) atomic() (in module flowrep.parsers.atomic_parser) AtomicData (class in flowrep.retrospective) AtomicRecipe (class in flowrep.nodes.atomic_recipe)

B

body (flowrep.nodes.helper_models.ConditionalCase attribute) (flowrep.nodes.helper_models.ExceptionCase attribute), [1] body_body_edges (flowrep.nodes.while_recipe.WhileRecipe property) body_condition_edges (flowrep.nodes.while_recipe.WhileRecipe property)

body_node (flowrep.nodes.for_recipe.ForEachRecipe attribute), [1] BodyWalker (class in flowrep.parsers.parser_protocol) browse() (flowrep.storage.LexicalBagBrowser method) build_model() (flowrep.parsers.parser_protocol.BodyWalker method) (flowrep.parsers.workflow_parser.WorkflowParser method)

C

case (flowrep.nodes.while_recipe.WhileRecipe attribute), [1] cases (flowrep.nodes.if_recipe.IfRecipe attribute), [1] check_outputs_when_not_unpacking() (flowrep.nodes.atomic_recipe.AtomicRecipe method) CompositeData (class in flowrep.retrospective) condition (flowrep.nodes.helper_models.ConditionalCase attribute)

condition_output (flowrep.nodes.helper_models.ConditionalCase attribute) ConditionalCase (class in flowrep.nodes.helper_models) consume() (flowrep.parsers.symbol_scope.SymbolScope method) consume_call_arguments() (in module flowrep.parsers.parser_helpers) consumer_node (flowrep.parsers.symbol_scope.SymbolConsumption attribute) consumer_port (flowrep.parsers.symbol_scope.SymbolConsumption attribute)

D

DagData (class in flowrep.retrospective) DATACLASS (flowrep.nodes.atomic_recipe.UnpackMode attribute) default (flowrep.retrospective.InputDataPort attribute) default_output_label() (in module flowrep.parsers.label_helpers) delimiter (flowrep.edge_models.HandleModel attribute)

description (flowrep.base_models.NodeRecipe attribute) deserialize() (flowrep.edge_models.HandleModel class method) DynamicSubgraphDynamicOutput (class in flowrep.subgraph_validation) DynamicSubgraphOwner (class in flowrep.subgraph_validation) DynamicSubgraphStaticOutput (class in flowrep.subgraph_validation)

E

edges (flowrep.nodes.workflow_recipe.WorkflowRecipe attribute), [1] (flowrep.parsers.parser_protocol.BodyWalker property) (flowrep.parsers.symbol_scope.SymbolScope property) (flowrep.parsers.workflow_parser.WorkflowParser property) (flowrep.retrospective.CompositeData attribute) (flowrep.subgraph_validation.StaticSubgraphOwner attribute)

else_case (flowrep.nodes.if_recipe.IfRecipe attribute), [1] ensure_function() (in module flowrep.parsers.parser_helpers) exception_cases (flowrep.nodes.try_recipe.TryRecipe attribute), [1] ExceptionCase (class in flowrep.nodes.helper_models) exceptions (flowrep.nodes.helper_models.ExceptionCase attribute), [1] extract_label_from_annotated() (in module flowrep.parsers.label_helpers)

F

FlowControlData (class in flowrep.retrospective) flowrep module flowrep.api module flowrep.api.schemas module flowrep.api.tools module flowrep.base_models module flowrep.converters module flowrep.converters.python_workflow_definition module flowrep.edge_models module flowrep.nodes module flowrep.nodes.atomic_recipe module flowrep.nodes.for_recipe module flowrep.nodes.helper_models module flowrep.nodes.if_recipe module flowrep.nodes.try_recipe module flowrep.nodes.union_types module flowrep.nodes.while_recipe module flowrep.nodes.workflow_recipe module flowrep.parsers module flowrep.parsers.atomic_parser module flowrep.parsers.case_helpers module flowrep.parsers.for_parser module flowrep.parsers.if_parser module

flowrep.parsers.label_helpers module flowrep.parsers.object_scope module flowrep.parsers.parser_helpers module flowrep.parsers.parser_protocol module flowrep.parsers.symbol_scope module flowrep.parsers.try_parser module flowrep.parsers.while_parser module flowrep.parsers.workflow_parser module flowrep.retrospective module flowrep.storage module flowrep.storage_widget module flowrep.subgraph_validation module flowrep.wfms module flowrep2pwd() (in module flowrep.converters.python_workflow_definition) FOR_EACH (flowrep.base_models.RecipeElementType attribute) ForEachData (class in flowrep.retrospective) ForEachRecipe (class in flowrep.nodes.for_recipe) fork() (flowrep.parsers.object_scope.ScopeProxy method) (flowrep.parsers.parser_protocol.BodyWalker method) (flowrep.parsers.symbol_scope.SymbolScope method) (flowrep.parsers.workflow_parser.WorkflowParser method) from_annotation() (flowrep.parsers.label_helpers.OutputMeta class method) from_param_kind() (flowrep.base_models.RestrictedParamKind class method) from_recipe() (flowrep.retrospective.AtomicData class method) (flowrep.retrospective.DagData class method) (flowrep.retrospective.FlowControlData class method) (flowrep.retrospective.NodeData class method) fully_qualified_name (flowrep.nodes.atomic_recipe.AtomicRecipe property) (flowrep.nodes.workflow_recipe.WorkflowRecipe property) function (flowrep.retrospective.AtomicData attribute)

G

generic_visit() (flowrep.parsers.workflow_parser.WorkflowParser method) get_annotated_output_labels() (in module flowrep.parsers.label_helpers) get_ast_function_node() (in module flowrep.parsers.parser_helpers) get_available_source_code() (in module flowrep.parsers.parser_helpers)

get_data() (flowrep.retrospective.InputDataPort method) get_function_definition() (in module flowrep.parsers.parser_helpers) get_labeled_recipe() (in module flowrep.parsers.atomic_parser) get_scope() (in module flowrep.parsers.object_scope) get_source_code() (in module flowrep.parsers.parser_helpers)

H

HandleModel (class in flowrep.edge_models)

have_defaults (flowrep.parsers.parser_helpers.SignatureInfo attribute) have_restricted_kinds (flowrep.parsers.parser_helpers.SignatureInfo attribute)

I

IF (flowrep.base_models.RecipeElementType attribute) IfData (class in flowrep.retrospective) IfRecipe (class in flowrep.nodes.if_recipe) index_label() (in module flowrep.parsers.label_helpers) info (flowrep.base_models.PythonReference attribute) info_factory (flowrep.parsers.parser_protocol.BodyWalker attribute) input_edges (flowrep.nodes.for_recipe.ForEachRecipe attribute), [1] (flowrep.nodes.if_recipe.IfRecipe attribute), [1] (flowrep.nodes.try_recipe.TryRecipe attribute), [1] (flowrep.nodes.while_recipe.WhileRecipe attribute), [1] (flowrep.nodes.workflow_recipe.WorkflowRecipe attribute), [1] (flowrep.parsers.parser_protocol.BodyWalker property) (flowrep.parsers.symbol_scope.SymbolScope property) (flowrep.parsers.workflow_parser.WorkflowParser property) (flowrep.retrospective.CompositeData attribute) (flowrep.subgraph_validation.DynamicSubgraphOwner attribute) (flowrep.subgraph_validation.StaticSubgraphOwner attribute) input_ports (flowrep.retrospective.NodeData attribute) InputDataPort (class in flowrep.retrospective) INPUTS (flowrep.base_models.IOTypes attribute) inputs (flowrep.base_models.NodeRecipe attribute) (flowrep.nodes.atomic_recipe.AtomicRecipe attribute) (flowrep.nodes.for_recipe.ForEachRecipe attribute) (flowrep.nodes.if_recipe.IfRecipe attribute) (flowrep.nodes.try_recipe.TryRecipe attribute) (flowrep.nodes.while_recipe.WhileRecipe attribute) (flowrep.nodes.workflow_recipe.WorkflowRecipe attribute) (flowrep.parsers.parser_protocol.BodyWalker property) (flowrep.parsers.symbol_scope.SymbolScope property) (flowrep.parsers.workflow_parser.WorkflowParser property) (flowrep.subgraph_validation.DynamicSubgraphOwner attribute) (flowrep.subgraph_validation.RecipeProtocol attribute) (flowrep.subgraph_validation.StaticSubgraphOwner attribute)

inputs_with_defaults (flowrep.base_models.NodeRecipe property) (flowrep.base_models.PythonReference attribute) (flowrep.nodes.atomic_recipe.AtomicRecipe property) (flowrep.nodes.workflow_recipe.WorkflowRecipe property) (flowrep.subgraph_validation.RecipeProtocol property) InputSource (class in flowrep.edge_models) IOTypes (class in flowrep.base_models) is_append_call() (in module flowrep.parsers.workflow_parser) is_valid_label() (in module flowrep.base_models) iterated_ports (flowrep.nodes.for_recipe.ForEachRecipe property)

K

KEYWORD_ONLY (flowrep.base_models.RestrictedParamKind attribute)

L

label (flowrep.nodes.helper_models.LabeledRecipe attribute) (flowrep.parsers.case_helpers.WalkedBranch attribute) (flowrep.parsers.label_helpers.OutputMeta attribute) LabeledRecipe (class in flowrep.nodes.helper_models) LexicalBagBrowser (class in flowrep.storage)

LexicalBagTree (class in flowrep.storage_widget) list_lexical_paths() (in module flowrep.storage) list_paths() (flowrep.storage.LexicalBagBrowser method) load() (flowrep.storage.LexicalBagBrowser method) load_from_bag() (in module flowrep.storage) load_selected() (flowrep.storage_widget.LexicalBagTree method)

M

merge_labels() (in module flowrep.parsers.label_helpers) model_config (flowrep.base_models.NodeRecipe attribute) (flowrep.base_models.PythonReference attribute) (flowrep.edge_models.HandleModel attribute) (flowrep.edge_models.InputSource attribute) (flowrep.edge_models.OutputTarget attribute) (flowrep.edge_models.SourceHandle attribute) (flowrep.edge_models.TargetHandle attribute) (flowrep.nodes.atomic_recipe.AtomicRecipe attribute) (flowrep.nodes.for_recipe.ForEachRecipe attribute) (flowrep.nodes.helper_models.ConditionalCase attribute) (flowrep.nodes.helper_models.ExceptionCase attribute) (flowrep.nodes.helper_models.LabeledRecipe attribute) (flowrep.nodes.if_recipe.IfRecipe attribute) (flowrep.nodes.try_recipe.TryRecipe attribute) (flowrep.nodes.while_recipe.WhileRecipe attribute) (flowrep.nodes.workflow_recipe.WorkflowRecipe attribute) (flowrep.parsers.label_helpers.OutputMeta attribute) module flowrep flowrep.api flowrep.api.schemas flowrep.api.tools flowrep.base_models flowrep.converters flowrep.converters.python_workflow_definition flowrep.edge_models flowrep.nodes flowrep.nodes.atomic_recipe flowrep.nodes.for_recipe flowrep.nodes.helper_models flowrep.nodes.if_recipe flowrep.nodes.try_recipe flowrep.nodes.union_types flowrep.nodes.while_recipe flowrep.nodes.workflow_recipe flowrep.parsers flowrep.parsers.atomic_parser flowrep.parsers.case_helpers flowrep.parsers.for_parser flowrep.parsers.if_parser flowrep.parsers.label_helpers flowrep.parsers.object_scope flowrep.parsers.parser_helpers flowrep.parsers.parser_protocol flowrep.parsers.symbol_scope flowrep.parsers.try_parser flowrep.parsers.while_parser flowrep.parsers.workflow_parser flowrep.retrospective flowrep.storage flowrep.storage_widget flowrep.subgraph_validation flowrep.wfms

N

names (flowrep.parsers.parser_helpers.SignatureInfo attribute) nested_ports (flowrep.nodes.for_recipe.ForEachRecipe attribute), [1] node (flowrep.edge_models.HandleModel attribute) (flowrep.edge_models.InputSource attribute) (flowrep.edge_models.OutputTarget attribute) (flowrep.edge_models.SourceHandle attribute) (flowrep.edge_models.TargetHandle attribute) (flowrep.nodes.helper_models.LabeledRecipe attribute)

NodeData (class in flowrep.retrospective) NodeRecipe (class in flowrep.base_models) nodes (flowrep.nodes.workflow_recipe.WorkflowRecipe attribute), [1] (flowrep.parsers.parser_protocol.BodyWalker attribute) (flowrep.retrospective.CompositeData attribute) (flowrep.subgraph_validation.StaticSubgraphOwner attribute) NONE (flowrep.nodes.atomic_recipe.UnpackMode attribute) NotData (class in flowrep.retrospective)

O

of() (flowrep.parsers.parser_helpers.SignatureInfo class method) output_edges (flowrep.nodes.for_recipe.ForEachRecipe attribute), [1] (flowrep.nodes.while_recipe.WhileRecipe attribute), [1] (flowrep.nodes.workflow_recipe.WorkflowRecipe attribute), [1] (flowrep.parsers.parser_protocol.BodyWalker property) (flowrep.parsers.symbol_scope.SymbolScope property) (flowrep.parsers.workflow_parser.WorkflowParser property) (flowrep.retrospective.CompositeData attribute) (flowrep.subgraph_validation.DynamicSubgraphStaticOutput attribute) (flowrep.subgraph_validation.StaticSubgraphOwner attribute) output_port (flowrep.parsers.symbol_scope.SymbolProduction attribute) output_ports (flowrep.retrospective.NodeData attribute) OutputDataPort (class in flowrep.retrospective) OutputMeta (class in flowrep.parsers.label_helpers)

OUTPUTS (flowrep.base_models.IOTypes attribute) outputs (flowrep.base_models.NodeRecipe attribute) (flowrep.nodes.atomic_recipe.AtomicRecipe attribute) (flowrep.nodes.for_recipe.ForEachRecipe attribute) (flowrep.nodes.if_recipe.IfRecipe attribute) (flowrep.nodes.try_recipe.TryRecipe attribute) (flowrep.nodes.while_recipe.WhileRecipe attribute) (flowrep.nodes.workflow_recipe.WorkflowRecipe attribute) (flowrep.parsers.parser_protocol.BodyWalker property) (flowrep.parsers.symbol_scope.SymbolScope property) (flowrep.parsers.workflow_parser.WorkflowParser property) (flowrep.subgraph_validation.DynamicSubgraphOwner attribute) (flowrep.subgraph_validation.RecipeProtocol attribute) (flowrep.subgraph_validation.StaticSubgraphOwner attribute) OutputTarget (class in flowrep.edge_models)

P

parse_atomic() (in module flowrep.parsers.atomic_parser) parse_case() (in module flowrep.parsers.case_helpers) parse_for_node() (in module flowrep.parsers.for_parser) parse_if_node() (in module flowrep.parsers.if_parser) parse_try_node() (in module flowrep.parsers.try_parser) parse_while_node() (in module flowrep.parsers.while_parser) parse_workflow() (in module flowrep.parsers.workflow_parser) parser2decorator() (in module flowrep.parsers.parser_helpers) port (flowrep.edge_models.HandleModel attribute) (flowrep.edge_models.InputSource attribute) (flowrep.edge_models.OutputTarget attribute) (flowrep.edge_models.SourceHandle attribute) (flowrep.edge_models.TargetHandle attribute)

POSITIONAL_ONLY (flowrep.base_models.RestrictedParamKind attribute) produce() (flowrep.parsers.symbol_scope.SymbolScope method) produce_symbols() (flowrep.parsers.symbol_scope.SymbolScope method) prospective_nodes (flowrep.nodes.for_recipe.ForEachRecipe property) (flowrep.nodes.if_recipe.IfRecipe property) (flowrep.nodes.try_recipe.TryRecipe property) (flowrep.nodes.while_recipe.WhileRecipe property) (flowrep.subgraph_validation.DynamicSubgraphOwner property) prospective_output_edges (flowrep.nodes.if_recipe.IfRecipe attribute), [1] (flowrep.nodes.try_recipe.TryRecipe attribute), [1] (flowrep.subgraph_validation.DynamicSubgraphDynamicOutput attribute) pwd2flowrep() (in module flowrep.converters.python_workflow_definition) PythonReference (class in flowrep.base_models)

R

recipe (flowrep.retrospective.NodeData attribute) recipe2data() (in module flowrep.retrospective) RecipeElementType (class in flowrep.base_models) RecipeProtocol (class in flowrep.subgraph_validation) reference (flowrep.nodes.atomic_recipe.AtomicRecipe attribute), [1] (flowrep.nodes.workflow_recipe.WorkflowRecipe attribute), [1] register() (flowrep.parsers.object_scope.ScopeProxy method) (flowrep.parsers.symbol_scope.SymbolScope method)

register_accumulator() (flowrep.parsers.symbol_scope.SymbolScope method) resolve_attribute_to_object() (in module flowrep.parsers.object_scope) resolve_symbol_to_object() (in module flowrep.parsers.object_scope) resolve_symbols_to_strings() (in module flowrep.parsers.parser_helpers) restricted_input_kinds (flowrep.base_models.PythonReference attribute) RestrictedParamKind (class in flowrep.base_models) run_recipe() (in module flowrep.wfms)

S

scope (flowrep.parsers.parser_protocol.BodyWalker attribute) ScopeProxy (class in flowrep.parsers.object_scope) serialize() (flowrep.edge_models.HandleModel method) SignatureInfo (class in flowrep.parsers.parser_helpers) skip_docstring() (in module flowrep.parsers.workflow_parser) source (flowrep.parsers.symbol_scope.SymbolConsumption attribute) (flowrep.parsers.symbol_scope.SymbolProduction attribute)

SourceCodeUnavailableError SourceHandle (class in flowrep.edge_models) StaticSubgraphOwner (class in flowrep.subgraph_validation) symbol (flowrep.parsers.symbol_scope.SymbolConsumption attribute) symbol_map (flowrep.parsers.parser_protocol.BodyWalker attribute) SymbolConsumption (class in flowrep.parsers.symbol_scope) SymbolProduction (class in flowrep.parsers.symbol_scope) SymbolScope (class in flowrep.parsers.symbol_scope)

T

TargetHandle (class in flowrep.edge_models) to_labeled_node() (flowrep.parsers.case_helpers.WalkedBranch method) transferred_outputs (flowrep.nodes.for_recipe.ForEachRecipe property) TRY (flowrep.base_models.RecipeElementType attribute) try_node (flowrep.nodes.try_recipe.TryRecipe attribute), [1] TryData (class in flowrep.retrospective) TryRecipe (class in flowrep.nodes.try_recipe)

TUPLE (flowrep.nodes.atomic_recipe.UnpackMode attribute) type (flowrep.base_models.NodeRecipe attribute) (flowrep.nodes.atomic_recipe.AtomicRecipe attribute), [1] (flowrep.nodes.for_recipe.ForEachRecipe attribute), [1] (flowrep.nodes.if_recipe.IfRecipe attribute), [1] (flowrep.nodes.try_recipe.TryRecipe attribute), [1] (flowrep.nodes.while_recipe.WhileRecipe attribute), [1] (flowrep.nodes.workflow_recipe.WorkflowRecipe attribute), [1]

U

unique_suffix() (in module flowrep.parsers.label_helpers) unpack_mode (flowrep.nodes.atomic_recipe.AtomicRecipe attribute), [1]

UnpackMode (class in flowrep.nodes.atomic_recipe) use_accumulator() (flowrep.parsers.symbol_scope.SymbolScope method)

V

validate_acyclic_edges() (in module flowrep.subgraph_validation) validate_bag() (in module flowrep.storage) validate_cases_not_empty() (flowrep.nodes.if_recipe.IfRecipe class method) validate_child_input_single_source() (flowrep.nodes.workflow_recipe.WorkflowRecipe method) validate_condition_is_accessible() (flowrep.nodes.helper_models.ConditionalCase method) validate_distinct_labels() (flowrep.nodes.helper_models.ConditionalCase method) validate_exception_cases_not_empty() (flowrep.nodes.try_recipe.TryRecipe class method) validate_exceptions_not_empty() (flowrep.nodes.helper_models.ExceptionCase class method) validate_input_edge_sources() (in module flowrep.subgraph_validation) validate_input_edge_targets() (in module flowrep.subgraph_validation) validate_internal_data_completeness() (flowrep.base_models.NodeRecipe method) (flowrep.nodes.for_recipe.ForEachRecipe method) (flowrep.nodes.if_recipe.IfRecipe method) (flowrep.nodes.try_recipe.TryRecipe method) (flowrep.nodes.while_recipe.WhileRecipe method) (flowrep.nodes.workflow_recipe.WorkflowRecipe method) (flowrep.subgraph_validation.RecipeProtocol method) validate_io_edges() (flowrep.nodes.for_recipe.ForEachRecipe method) (flowrep.nodes.if_recipe.IfRecipe method) (flowrep.nodes.try_recipe.TryRecipe method) (flowrep.nodes.while_recipe.WhileRecipe method) (flowrep.nodes.workflow_recipe.WorkflowRecipe method) validate_iterated_ports_exist() (flowrep.nodes.for_recipe.ForEachRecipe method)

validate_nodes_are_fully_sourced() (in module flowrep.subgraph_validation) validate_non_overlapping_iterators() (flowrep.nodes.for_recipe.ForEachRecipe method) validate_output_edge_sources() (in module flowrep.subgraph_validation) validate_output_edge_targets() (in module flowrep.subgraph_validation) validate_output_is_subset_of_inputs() (flowrep.nodes.while_recipe.WhileRecipe method) validate_prospective_nodes_have_unique_labels() (flowrep.nodes.if_recipe.IfRecipe method) (flowrep.nodes.try_recipe.TryRecipe method) validate_prospective_sources_list() (in module flowrep.subgraph_validation) validate_sibling_edges() (in module flowrep.subgraph_validation) validate_some_iteration() (flowrep.nodes.for_recipe.ForEachRecipe method) validate_subgraph() (flowrep.nodes.workflow_recipe.WorkflowRecipe method) validate_unique() (in module flowrep.base_models) VAR_KEYWORD (flowrep.base_models.RestrictedParamKind attribute) VAR_POSITIONAL (flowrep.base_models.RestrictedParamKind attribute) visit() (flowrep.parsers.parser_protocol.BodyWalker method) visit_AnnAssign() (flowrep.parsers.workflow_parser.WorkflowParser method) visit_Assign() (flowrep.parsers.workflow_parser.WorkflowParser method) visit_Expr() (flowrep.parsers.workflow_parser.WorkflowParser method) visit_For() (flowrep.parsers.workflow_parser.WorkflowParser method) visit_If() (flowrep.parsers.workflow_parser.WorkflowParser method) visit_Import() (flowrep.parsers.workflow_parser.WorkflowParser method) visit_ImportFrom() (flowrep.parsers.workflow_parser.WorkflowParser method) visit_Try() (flowrep.parsers.workflow_parser.WorkflowParser method) visit_While() (flowrep.parsers.workflow_parser.WorkflowParser method)

W

walk() (flowrep.parsers.parser_protocol.BodyWalker method) (flowrep.parsers.workflow_parser.WorkflowParser method) walk_branch() (in module flowrep.parsers.case_helpers) WalkedBranch (class in flowrep.parsers.case_helpers) walker (flowrep.parsers.case_helpers.WalkedBranch attribute) WHILE (flowrep.base_models.RecipeElementType attribute) WhileData (class in flowrep.retrospective)

WhileRecipe (class in flowrep.nodes.while_recipe) widget() (flowrep.storage.LexicalBagBrowser method) wire_inputs() (in module flowrep.parsers.case_helpers) wire_outputs() (in module flowrep.parsers.case_helpers) WORKFLOW (flowrep.base_models.RecipeElementType attribute) workflow() (in module flowrep.parsers.workflow_parser) WorkflowParser (class in flowrep.parsers.workflow_parser) WorkflowRecipe (class in flowrep.nodes.workflow_recipe)

Z

zipped_ports (flowrep.nodes.for_recipe.ForEachRecipe attribute), [1]